Public API
Contents
Index
- Crystallography.SeitzOperator
- CrystallographyBase.CartesianFromFractional
- CrystallographyBase.FractionalFromCartesian
- CrystallographyBase.Lattice
- CrystallographyBase.MetricTensor
- CrystallographyBase.PrimitiveFromStandardized
- CrystallographyBase.ReciprocalLattice
- CrystallographyBase.ReciprocalPoint
- CrystallographyBase.StandardizedFromPrimitive
- CrystallographyBase.cellvolume
- CrystallographyBase.coordinates
- CrystallographyBase.distance
- CrystallographyBase.supercell
- CrystallographyBase.weights
Public interface
Lattice
Missing docstring for CrystalSystem. Check Documenter's build log for details.
Missing docstring for Triclinic. Check Documenter's build log for details.
Missing docstring for Monoclinic. Check Documenter's build log for details.
Missing docstring for Orthorhombic. Check Documenter's build log for details.
Missing docstring for Tetragonal. Check Documenter's build log for details.
Missing docstring for Cubic. Check Documenter's build log for details.
Missing docstring for Trigonal. Check Documenter's build log for details.
Missing docstring for Hexagonal. Check Documenter's build log for details.
Missing docstring for Centering. Check Documenter's build log for details.
Missing docstring for BaseCentering. Check Documenter's build log for details.
Missing docstring for Primitive. Check Documenter's build log for details.
Missing docstring for BodyCentering. Check Documenter's build log for details.
Missing docstring for FaceCentering. Check Documenter's build log for details.
Missing docstring for RhombohedralCentering. Check Documenter's build log for details.
Missing docstring for BaseCentering. Check Documenter's build log for details.
Missing docstring for Bravais. Check Documenter's build log for details.
CrystallographyBase.Lattice — TypeLattice(data::AbstractMatrix)Construct a Lattice from a matrix.
The basis vectors of the matrix are stored as columns.
Lattice(𝐚::AbstractVector, 𝐛::AbstractVector, 𝐜::AbstractVector)Construct a Lattice from three basis vectors.
Lattice(basisvectors::AbstractVector{<:AbstractVector})Construct a Lattice from a vector of three basis vectors.
Lattice(a, b, c, α, β, γ; axis = :a)Construct a Lattice from the six cell parameters.
The default convention we used here is that edge vector 𝐚 in the positive x-axis direction, edge vector 𝐛 in the x-y plane with a positive y-axis component, and edge vector 𝐜 with a positive z-axis component in the Cartesian system. See Wikipedia. You can also choose axis = :c.
Lattice(cell::Cell)Get the lattice of a Cell.
Lattice(g::MetricTensor)Construct a Lattice from a MetricTensor.
Missing docstring for centering. Check Documenter's build log for details.
Missing docstring for crystalsystem. Check Documenter's build log for details.
Missing docstring for basis_vectors. Check Documenter's build log for details.
Missing docstring for cellparameters. Check Documenter's build log for details.
CrystallographyBase.supercell — Functionsupercell(lattice::Lattice, repfactors::AbstractMatrix{<:Integer})
supercell(lattice::Lattice, repfactors::AbstractVector{<:Integer})
supercell(lattice::Lattice, repfactor::Integer)Create a supercell from lattice.
supercell(cell::Cell, repfactors::AbstractMatrix{<:Integer})
supercell(cell::Cell, repfactors::AbstractVector{<:Integer})
supercell(cell::Cell, repfactor::Integer)Create a supercell from cell.
Currently, only integral replications are supported.
Reciprocal space
Note that we take $2pi$ as $1$, not the solid-state physics convention.
CrystallographyBase.ReciprocalPoint — TypeReciprocalPoint(x, y, z, w)Represent a special point of the 3D Brillouin zone. Each of them has a weight w.
CrystallographyBase.ReciprocalLattice — TypeReciprocalLattice(data::MMatrix)Construct a ReciprocalLattice.
You should not use this function directly, always use reciprocal of a Lattice.
Missing docstring for inv. Check Documenter's build log for details.
Missing docstring for reciprocal_mesh. Check Documenter's build log for details.
CrystallographyBase.coordinates — Functioncoordinates(arr::AbstractArray{<:ReciprocalPoint})Get the coordinates of an array of ReciprocalPoints.
CrystallographyBase.weights — Functionweights(arr::AbstractArray{<:ReciprocalPoint})Get the weights of an array of ReciprocalPoints.
Miller and Miller–Bravais indices
Missing docstring for Miller. Check Documenter's build log for details.
Missing docstring for MillerBravais. Check Documenter's build log for details.
Missing docstring for ReciprocalMiller. Check Documenter's build log for details.
Missing docstring for ReciprocalMillerBravais. Check Documenter's build log for details.
Missing docstring for family. Check Documenter's build log for details.
Missing docstring for @m_str. Check Documenter's build log for details.
Metric tensor
CrystallographyBase.MetricTensor — TypeMetricTensor(𝐚::AbstractVector, 𝐛::AbstractVector, 𝐜::AbstractVector)Generate a MetricTensor from the three basis vectors.
MetricTensor(lattice::Lattice)Generate a MetricTensor from a Lattice.
MetricTensor(a, b, c, α, β, γ)Generate a MetricTensor from the six cell parameters.
Missing docstring for directioncosine. Check Documenter's build log for details.
Missing docstring for directionangle. Check Documenter's build log for details.
CrystallographyBase.distance — Functiondistance(𝐚::AbstractVector, g::MetricTensor, 𝐛::AbstractVector)Get the distance between two coordinates using a MetricTensor.
Missing docstring for interplanar_spacing. Check Documenter's build log for details.
Transformations
CrystallographyBase.CartesianFromFractional — TypeCartesianFromFractional(lattice::Union{Lattice,ReciprocalLattice})
CartesianFromFractional(a, b, c, α, β, γ)Get the transformation from fractional coordinates to Cartesian coordinates.
CrystallographyBase.FractionalFromCartesian — TypeFractionalFromCartesian(lattice::Union{Lattice,ReciprocalLattice})
FractionalFromCartesian(a, b, c, α, β, γ)Get the transformation from Cartesian coordinates to fractional coordinates.
CrystallographyBase.PrimitiveFromStandardized — TypePrimitiveFromStandardized(tf::AbstractMatrix)Construct the transformation from a standardized cell to a primitive cell.
CrystallographyBase.StandardizedFromPrimitive — TypeStandardizedFromPrimitive(tf::AbstractMatrix)Construct the transformation from a primitive cell to a standardized cell.
Others
CrystallographyBase.cellvolume — Functioncellvolume(a, b, c, α, β, γ)Calculate the cell volume from 6 cell parameters.
cellvolume(l::Lattice)
cellvolume(c::Cell)Calculate the cell volume from a Lattice or a Cell.
cellvolume(g::MetricTensor)Calculate the cell volume from a MetricTensor.
Symmetry
Crystallography.SeitzOperator — TypeSeitzOperator(𝐑::AbstractMatrix, 𝐭::AbstractVector)
SeitzOperator(𝐑::AbstractMatrix)
SeitzOperator(𝐭::AbstractVector)Construct a Seitz operator from matrices, vectors, or both.
The operator is defined by the following equation:
\[\left[ \begin{array}{ccc|c} & & & \\ & \mathbf{R} & & \mathbf{t} \\ & & & \\ \hline 0 & 0 & 0 & 1 \end{array} \right],\]
where $\mathbf{R}$ is a point group operation and $\mathbf{t}$ is a translation.